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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_03559PAP2 superfamily protein. (386 aa)    
Predicted Functional Partners:
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.846
T45_08958
Hypothetical protein.
  
 
  0.817
T45_09336
Hypothetical protein.
  
 
  0.817
dhbF_8
Dimodular nonribosomal peptide synthase.
   
 0.800
T45_03558
Mannosyltransferase; PIG-V.
       0.766
T45_08631
acyl-CoA synthetase.
  
 
  0.765
bioI_3
Biotin biosynthesis cytochrome P450.
  
 
  0.747
T45_06273
Phosphatidylglycerophosphatase B.
  
   
0.715
T45_00079
Steroid C26-monooxygenase; Belongs to the cytochrome P450 family.
    
  0.710
T45_00367
Cytochrome P450 107B1.
    
  0.710
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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