Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_03559PAP2 superfamily protein. (386 aa)    
Predicted Functional Partners:
T45_03558
Mannosyltransferase; PIG-V.
       0.748
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.676
T45_06557
Hypothetical protein.
  
     0.675
doxX_1
DoxX.
 
     0.674
dhbF_8
Dimodular nonribosomal peptide synthase.
   
 0.660
T45_00557
Hypothetical protein.
  
     0.654
T45_09108
Hypothetical protein.
  
     0.650
T45_07987
Hypothetical protein.
  
 
  0.647
T45_00044
Prenyltransferase and squalene oxidase repeat.
  
     0.646
T45_02489
Hypothetical protein.
  
     0.633
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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