Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_03628Hypothetical protein. (348 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase.
   
 0.899
T45_03629
(2E,6E)-farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
   
   0.879
T45_09072
Sensory histidine kinase AtoS.
 
 0.878
tam_2
Trans-aconitate 2-methyltransferase.
 
 
 0.876
yrrB
TPR repeat-containing protein YrrB.
 
 0.871
T45_02132
Calerythrin.
  
 
  0.840
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 0.838
T45_02580
Hypothetical protein.
  
 
  0.822
T45_01411
Sensory histidine kinase AtoS.
  
 
 0.782
T45_08744
EF hand.
  
 
  0.778
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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