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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_0364127 kDa antigen Cfp30B. (269 aa)    
Predicted Functional Partners:
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.822
T45_03150
2-methylisoborneol synthase.
       0.545
vioD
Putative tryptophan hydroxylase VioD.
       0.544
T45_03646
3-demethylubiquinone-9 3-methyltransferase.
       0.530
bphC_1
Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase.
    
  0.470
T45_03644
Phosphotransferase enzyme family protein.
       0.459
T45_06038
Glyoxalase-like domain protein.
 
 
  0.448
T45_03642
Hypothetical protein.
       0.406
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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