STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galB_14-oxalmesaconate hydratase. (249 aa)    
Predicted Functional Partners:
proA_2
4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
  
 0.987
galD
4-oxalomesaconate tautomerase.
 
  
 0.985
T45_05129
4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
  
 0.945
bphC_2
Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase.
 
    0.924
ydfH_2
Putative HTH-type transcriptional regulator.
 
     0.714
gcvT_2
Aminomethyltransferase; Belongs to the GcvT family.
  
     0.562
ligB
Protocatechuate 4,5-dioxygenase beta chain.
 
     0.482
T45_05728
Amidohydrolase.
  
  
  0.458
pcaK_1
4-hydroxybenzoate transporter PcaK.
       0.451
T45_01910
Hypothetical protein.
  
     0.436
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.