STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citECitrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family. (282 aa)    
Predicted Functional Partners:
bbsF_3
succinyl-CoA:(R-benzylsuccinate CoA-transferase; Belongs to the CoA-transferase III family.
 
 
 0.936
T45_04038
ADP-ribosylglycohydrolase.
 
     0.927
T45_04037
ADP-ribosylglycohydrolase.
 
     0.922
mcl1
malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.921
T45_04039
ADP-ribosylglycohydrolase.
 
     0.911
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.885
korA
2-oxoglutarate oxidoreductase subunit KorA.
    
 0.863
paaZ
Bifunctional protein PaaZ.
 
 
 0.852
ghrB_3
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.834
accA
Acetyl-coenzyme A carboxylase carboxyl.
    
 0.822
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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