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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_0405926 kDa periplasmic immunogenic protein. (239 aa)    
Predicted Functional Partners:
draG_2
ADP-ribosyl-[dinitrogen reductase].
 
     0.628
cpdB
2',3'-cyclic-nucleotide; Belongs to the 5'-nucleotidase family.
       0.595
T45_02484
Hypothetical protein.
  
     0.584
T45_02278
Putative prophage phiRv2 integrase; Belongs to the 'phage' integrase family.
 
     0.572
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.566
T45_01208
Hypothetical protein.
  
     0.547
pdtaR
Putative transcriptional regulatory protein.
       0.519
T45_05100
Hypothetical protein.
  
     0.519
T45_07720
Hypothetical protein.
  
     0.511
pheT
phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.493
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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