pdtaR protein (Streptomyces turgidiscabies) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pdtaR

Putative transcriptional regulatory protein. (218 aa)

Predicted Functional Partners:

pdtaS

0.853

T45_04061

0.715

rpsA

0.704

T45_04068

0.699

nasF_2

0.659

T45_00119

0.656

rpsA_1

0.652

atpD

0.651

atpC

0.618

braC

0.617

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_00119	pdtaR	T45_00119	T45_04063	Hypothetical protein.	Putative transcriptional regulatory protein.	0.656
T45_00119	rpsA	T45_00119	T45_04080	Hypothetical protein.	Hypothetical protein.	0.548
T45_00119	rpsA_1	T45_00119	T45_02126	Hypothetical protein.	30S ribosomal protein S1.	0.548
T45_04061	pdtaR	T45_04061	T45_04063	Hypothetical protein.	Putative transcriptional regulatory protein.	0.715
T45_04068	pdtaR	T45_04068	T45_04063	Hypothetical protein.	Putative transcriptional regulatory protein.	0.699
atpC	atpD	T45_02031	T45_02030	ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.999
atpC	pdtaR	T45_02031	T45_04063	ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Putative transcriptional regulatory protein.	0.618
atpD	atpC	T45_02030	T45_02031	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
atpD	pdtaR	T45_02030	T45_04063	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	Putative transcriptional regulatory protein.	0.651
atpD	rpsA	T45_02030	T45_04080	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	Hypothetical protein.	0.699
atpD	rpsA_1	T45_02030	T45_02126	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	30S ribosomal protein S1.	0.699
braC	pdtaR	T45_07027	T45_04063	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	Putative transcriptional regulatory protein.	0.617
nasF_2	pdtaR	T45_06564	T45_04063	uroporphyrinogen-III C-methyltransferase.	Putative transcriptional regulatory protein.	0.659
pdtaR	T45_00119	T45_04063	T45_00119	Putative transcriptional regulatory protein.	Hypothetical protein.	0.656
pdtaR	T45_04061	T45_04063	T45_04061	Putative transcriptional regulatory protein.	Hypothetical protein.	0.715
pdtaR	T45_04068	T45_04063	T45_04068	Putative transcriptional regulatory protein.	Hypothetical protein.	0.699
pdtaR	atpC	T45_04063	T45_02031	Putative transcriptional regulatory protein.	ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.618
pdtaR	atpD	T45_04063	T45_02030	Putative transcriptional regulatory protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.651
pdtaR	braC	T45_04063	T45_07027	Putative transcriptional regulatory protein.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.617
pdtaR	nasF_2	T45_04063	T45_06564	Putative transcriptional regulatory protein.	uroporphyrinogen-III C-methyltransferase.	0.659