STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubiE_4Ubiquinone/menaquinone biosynthesis methyltransferase. (291 aa)    
Predicted Functional Partners:
dhbF_8
Dimodular nonribosomal peptide synthase.
    
 0.832
hrpB_1
ATP-dependent RNA helicase HrpB.
       0.776
mlr_1
4-methylaminobutanoate oxidase; Belongs to the GcvT family.
     
 0.740
rpsA
Hypothetical protein.
       0.684
T45_01379
SEC-C motif protein.
  
     0.654
T45_08398
Hypothetical protein.
 
     0.645
lgrD_2
Linear gramicidin synthase subunit D.
     
 0.632
lgrB
Linear gramicidin synthase subunit B.
     
 0.607
txtB
Thaxtomin synthase B.
     
 0.607
txtA
Thaxtomin synthase A.
     
 0.607
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.