STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_04096Putative acetyltransferase. (160 aa)    
Predicted Functional Partners:
T45_04097
Endoribonuclease L-PSP.
  
    0.809
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
 
 0.677
korA
2-oxoglutarate oxidoreductase subunit KorA.
     
  0.587
gpsA_1
Glycerol-3-phosphate dehydrogenase [NAD(P+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
   0.582
gpsA_2
Glycerol-3-phosphate dehydrogenase [NAD(P+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
   0.582
gbh
Guanidinobutyrase; Belongs to the arginase family.
 
 
 0.525
T45_04099
Hypothetical protein.
       0.509
T45_07910
MarR family protein.
 
     0.480
T45_09039
CYTH domain protein.
  
     0.454
T45_01670
Hypothetical protein.
  
  
  0.418
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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