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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabR_3HTH-type transcriptional regulatory protein. (484 aa)    
Predicted Functional Partners:
T45_04110
Carboxymuconolactone decarboxylase family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.726
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 
 0.675
kgd
Multifunctional 2-oxoglutarate metabolism enzyme.
   
 
 0.644
lysN_4
2-aminoadipate transaminase.
  
     0.538
trpE_1
Anthranilate synthase component 1.
   
 
 0.533
trpE_2
Anthranilate synthase component 1.
   
 
 0.533
trpE_3
Anthranilate synthase component 1.
   
 
 0.533
cmdD_1
Chondramide synthase cmdD.
  
 
  0.464
lgrD_2
Linear gramicidin synthase subunit D.
  
 
  0.444
lgrB
Linear gramicidin synthase subunit B.
   
 
  0.443
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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