ubiE_5 protein (Streptomyces turgidiscabies)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_02702	ubiE_5	T45_02702	T45_04116	A-factor biosynthesis hotdog domain protein.	Ubiquinone/menaquinone biosynthesis methyltransferase.	0.610
dhbF_8	lgrB	T45_05484	T45_02352	Dimodular nonribosomal peptide synthase.	Linear gramicidin synthase subunit B.	0.999
dhbF_8	lgrD_2	T45_05484	T45_05481	Dimodular nonribosomal peptide synthase.	Linear gramicidin synthase subunit D.	0.999
dhbF_8	mlr_1	T45_05484	T45_00712	Dimodular nonribosomal peptide synthase.	4-methylaminobutanoate oxidase; Belongs to the GcvT family.	0.895
dhbF_8	pks2	T45_05484	T45_01967	Dimodular nonribosomal peptide synthase.	Phthioceranic/hydroxyphthioceranic acid.	0.999
dhbF_8	ppsE_1	T45_05484	T45_02351	Dimodular nonribosomal peptide synthase.	Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.	0.999
dhbF_8	txtA	T45_05484	T45_09185	Dimodular nonribosomal peptide synthase.	Thaxtomin synthase A.	0.999
dhbF_8	txtB	T45_05484	T45_09184	Dimodular nonribosomal peptide synthase.	Thaxtomin synthase B.	0.999
dhbF_8	ubiE_5	T45_05484	T45_04116	Dimodular nonribosomal peptide synthase.	Ubiquinone/menaquinone biosynthesis methyltransferase.	0.832
gcvP	mlr_1	T45_09295	T45_00712	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	4-methylaminobutanoate oxidase; Belongs to the GcvT family.	0.999
gcvP	txtA	T45_09295	T45_09185	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Thaxtomin synthase A.	0.730
gcvP	txtB	T45_09295	T45_09184	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Thaxtomin synthase B.	0.730
gcvP	ubiE_5	T45_09295	T45_04116	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Ubiquinone/menaquinone biosynthesis methyltransferase.	0.600
lgrB	dhbF_8	T45_02352	T45_05484	Linear gramicidin synthase subunit B.	Dimodular nonribosomal peptide synthase.	0.999
lgrB	lgrD_2	T45_02352	T45_05481	Linear gramicidin synthase subunit B.	Linear gramicidin synthase subunit D.	0.999
lgrB	pks2	T45_02352	T45_01967	Linear gramicidin synthase subunit B.	Phthioceranic/hydroxyphthioceranic acid.	0.998
lgrB	ppsE_1	T45_02352	T45_02351	Linear gramicidin synthase subunit B.	Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.	0.999
lgrB	txtA	T45_02352	T45_09185	Linear gramicidin synthase subunit B.	Thaxtomin synthase A.	0.995
lgrB	txtB	T45_02352	T45_09184	Linear gramicidin synthase subunit B.	Thaxtomin synthase B.	0.995
lgrB	ubiE_5	T45_02352	T45_04116	Linear gramicidin synthase subunit B.	Ubiquinone/menaquinone biosynthesis methyltransferase.	0.607