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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chaASodium/proton antiporter ChaA. (366 aa)    
Predicted Functional Partners:
T45_04127
Hypothetical protein.
       0.722
yceD_6
General stress protein 16U.
       0.624
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.550
T45_05200
Nitronate monooxygenase.
       0.549
mgtA_1
Magnesium-transporting ATPase, P-type 1.
    
 
 0.526
T45_06160
Calcium-transporting ATPase 1.
    
 
 0.526
T45_06911
Hypothetical protein.
    
 
 0.526
T45_02132
Calerythrin.
    
 
 0.513
T45_08744
EF hand.
    
 
 0.513
pbpE_3
Penicillin-binding protein 4*.
       0.505
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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