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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gbhGuanidinobutyrase; Belongs to the arginase family. (337 aa)    
Predicted Functional Partners:
adiA
Biodegradative arginine decarboxylase.
    
 0.961
ilvB
Acetolactate synthase isozyme 1 large subunit; Belongs to the TPP enzyme family.
 
  
 0.928
aguA
Agmatine deiminase.
    
 0.918
T45_06101
Hypothetical protein.
 
 
 0.910
gltB_1
Glutamate synthase [NADPH] large chain.
    
 0.902
patA_2
Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.889
gabT
4-aminobutyrate aminotransferase GabT; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.887
lysA_1
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.883
accA1_1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
  
 
 0.879
aam_2
Acylamidase; Belongs to the amidase family.
    
 0.879
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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