Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_04181Hypothetical protein. (500 aa)    
Predicted Functional Partners:
T45_04182
Hypothetical protein.
  
    0.655
T45_06987
Hypothetical protein.
  
     0.582
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.561
rpoB_1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.561
T45_05217
55.5 kDa and 49.5 kDa sporulation proteins.
  
     0.547
vapB5
Putative antitoxin VapB5; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.537
iucB_1
N(6)-hydroxylysine O-acetyltransferase.
  
    0.530
iucC
Aerobactin synthase.
  
    0.530
T45_00040
Hypothetical protein.
  
     0.528
T45_05788
55.5 kDa and 49.5 kDa sporulation proteins.
  
     0.527
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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