araN_5 protein (Streptomyces turgidiscabies)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

araN_5

Putative arabinose-binding protein precursor. (444 aa)

Predicted Functional Partners:

lacF_14

0.996

lacG_3

0.996

sugC

0.972

lacF_28

0.905

lacF_21

0.895

lacF_11

0.893

lacG_5

0.890

lacG_2

0.877

lacG_6

0.866

lacG_7

0.862

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
araN_5	lacF_11	T45_04192	T45_03106	Putative arabinose-binding protein precursor.	Lactose transport system permease protein LacF.	0.893
araN_5	lacF_14	T45_04192	T45_04193	Putative arabinose-binding protein precursor.	Lactose transport system permease protein LacF.	0.996
araN_5	lacF_21	T45_04192	T45_05720	Putative arabinose-binding protein precursor.	Lactose transport system permease protein LacF.	0.895
araN_5	lacF_28	T45_04192	T45_08260	Putative arabinose-binding protein precursor.	Lactose transport system permease protein LacF.	0.905
araN_5	lacG_2	T45_04192	T45_03107	Putative arabinose-binding protein precursor.	Lactose transport system permease protein LacG.	0.877
araN_5	lacG_3	T45_04192	T45_04194	Putative arabinose-binding protein precursor.	Lactose transport system permease protein LacG.	0.996
araN_5	lacG_5	T45_04192	T45_05721	Putative arabinose-binding protein precursor.	Lactose transport system permease protein LacG.	0.890
araN_5	lacG_6	T45_04192	T45_07135	Putative arabinose-binding protein precursor.	Lactose transport system permease protein LacG.	0.866
araN_5	lacG_7	T45_04192	T45_08261	Putative arabinose-binding protein precursor.	Lactose transport system permease protein LacG.	0.862
araN_5	sugC	T45_04192	T45_06084	Putative arabinose-binding protein precursor.	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.	0.972
lacF_11	araN_5	T45_03106	T45_04192	Lactose transport system permease protein LacF.	Putative arabinose-binding protein precursor.	0.893
lacF_11	lacF_14	T45_03106	T45_04193	Lactose transport system permease protein LacF.	Lactose transport system permease protein LacF.	0.807
lacF_11	lacG_2	T45_03106	T45_03107	Lactose transport system permease protein LacF.	Lactose transport system permease protein LacG.	0.989
lacF_11	lacG_3	T45_03106	T45_04194	Lactose transport system permease protein LacF.	Lactose transport system permease protein LacG.	0.962
lacF_11	lacG_5	T45_03106	T45_05721	Lactose transport system permease protein LacF.	Lactose transport system permease protein LacG.	0.955
lacF_11	lacG_6	T45_03106	T45_07135	Lactose transport system permease protein LacF.	Lactose transport system permease protein LacG.	0.905
lacF_11	lacG_7	T45_03106	T45_08261	Lactose transport system permease protein LacF.	Lactose transport system permease protein LacG.	0.905
lacF_11	sugC	T45_03106	T45_06084	Lactose transport system permease protein LacF.	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.	0.976
lacF_14	araN_5	T45_04193	T45_04192	Lactose transport system permease protein LacF.	Putative arabinose-binding protein precursor.	0.996
lacF_14	lacF_11	T45_04193	T45_03106	Lactose transport system permease protein LacF.	Lactose transport system permease protein LacF.	0.807