Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydgJPutative oxidoreductase YdgJ. (987 aa)    
Predicted Functional Partners:
T45_04239
Hypothetical protein; Belongs to the UPF0303 family.
 
    0.904
T45_04240
Luciferase-like monooxygenase.
       0.754
iolE_3
Inosose dehydratase.
 
 
  0.729
suhB_2
Inositol-1-monophosphatase.
 
  
 0.689
T45_04236
Hypothetical protein.
       0.675
suhB_3
Inositol-1-monophosphatase.
    
 0.623
nagD
Ribonucleotide monophosphatase NagD; Belongs to the HAD-like hydrolase superfamily.
       0.622
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.621
T45_04233
Sortase family protein.
       0.576
T45_04237
Hypothetical protein.
       0.538
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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