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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_04246Hypothetical protein. (491 aa)    
Predicted Functional Partners:
T45_04245
Sortase family protein.
       0.748
T45_04497
alpha-L-arabinofuranosidase B (ABFB.
 
     0.713
T45_06973
Endonuclease/exonuclease/phosphatase family protein.
  
     0.694
T45_07000
Endonuclease/exonuclease/phosphatase family protein.
  
     0.690
T45_02605
Jacalin-like lectin domain protein.
  
     0.688
T45_04244
Hypothetical protein.
       0.688
engD
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.688
T45_03120
Hypothetical protein.
  
     0.681
pelE
Pectate lyase E precursor.
  
     0.670
T45_02628
Alginate lyase.
  
     0.669
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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