Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lon_3Lon protease. (263 aa)    
Predicted Functional Partners:
kipR_2
HTH-type transcriptional regulator KipR.
       0.775
rgy
Reverse gyrase.
       0.652
helD_2
Helicase IV.
  
     0.628
bmr3_6
Multidrug resistance protein 3.
       0.603
whiB1_1
Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.540
holA
Hypothetical protein.
 
     0.531
T45_09291
Hypothetical protein.
  
     0.514
doc
Toxin Doc.
       0.490
yutF
Putative hydrolase YutF.
  
     0.488
pepN_1
Aminopeptidase N.
  
     0.471
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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