Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
benM_2HTH-type transcriptional regulator BenM; Belongs to the LysR transcriptional regulatory family. (323 aa)    
Predicted Functional Partners:
yofA_2
HTH-type transcriptional regulator YofA; Belongs to the LysR transcriptional regulatory family.
  
     0.737
gltC_5
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.734
cmpR_1
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.723
gltC_7
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.722
cmpR_2
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.694
gltC_6
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.644
T45_04367
Major Facilitator Superfamily protein.
       0.613
cysL
HTH-type transcriptional regulator CysL; Belongs to the LysR transcriptional regulatory family.
  
     0.608
rpoB_1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.606
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.573
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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