Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yicI_2Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family. (769 aa)    
Predicted Functional Partners:
ccpA_8
Catabolite control protein A.
 
     0.828
msmE_9
Multiple sugar-binding protein precursor.
 
    0.798
lacF_15
Lactose transport system permease protein LacF.
 
     0.741
lacG_4
Lactose transport system permease protein LacG.
 
     0.737
bglX_3
Periplasmic beta-glucosidase precursor.
 
  
 0.728
malQ
4-alpha-glucanotransferase.
    
 0.727
xyl3A_2
Xylan 1,4-beta-xylosidase precursor.
 
  
 0.701
xyl3A_1
Xylan 1,4-beta-xylosidase precursor.
 
  
 0.697
amy
Alpha-amylase precursor; Belongs to the glycosyl hydrolase 13 family.
    
 0.694
agaA_3
Alpha-galactosidase A precursor.
 
  
 0.688
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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