Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_04388Hypothetical protein. (300 aa)    
Predicted Functional Partners:
T45_09013
Hypothetical protein.
  
     0.771
T45_07331
Hypothetical protein.
  
     0.704
T45_06881
PLAT/LH2 domain protein.
  
     0.632
T45_08744
EF hand.
  
     0.629
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
       0.560
T45_01155
Hypothetical protein.
  
     0.501
T45_06463
Hypothetical protein.
  
     0.472
rpmJ
50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
       0.441
kefF
Glutathione-regulated potassium-efflux system.
  
     0.410
T45_04441
alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain protein.
  
     0.400
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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