Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_04436F5/8 type C domain protein. (902 aa)    
Predicted Functional Partners:
T45_05034
alpha-L-fucosidase.
 
  
  0.855
nagJ_1
O-GlcNAcase NagJ precursor.
  
  
  0.847
T45_04444
alpha-L-fucosidase.
  
  
  0.837
T45_07078
alpha-L-fucosidase.
  
  
  0.822
abfB_4
Extracellular exo-alpha-L-arabinofuranosidase precursor.
  
  
  0.819
ygjK
Glucosidase YgjK precursor.
  
 0.803
T45_08467
alpha-L-fucosidase.
  
  
  0.781
T45_03171
alpha-L-fucosidase.
  
  
  0.780
T45_08072
Hypothetical protein.
  
  
 
0.774
amy
Alpha-amylase precursor; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.773
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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