STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_04436F5/8 type C domain protein. (902 aa)    
Predicted Functional Partners:
T45_05034
alpha-L-fucosidase.
 
  
  0.875
nagJ_1
O-GlcNAcase NagJ precursor.
  
  
  0.868
T45_04444
alpha-L-fucosidase.
  
  
  0.859
T45_07078
alpha-L-fucosidase.
  
  
  0.846
abfB_4
Extracellular exo-alpha-L-arabinofuranosidase precursor.
  
  
  0.844
T45_08072
Hypothetical protein.
  
  
 
0.819
T45_08467
alpha-L-fucosidase.
  
  
  0.811
T45_03171
alpha-L-fucosidase.
  
  
  0.810
T45_06830
Hypothetical protein.
  
  
 
0.800
amy
Alpha-amylase precursor; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.735
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.