Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yecDIsochorismatase family protein YecD. (187 aa)    
Predicted Functional Partners:
accA1_1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
    
  0.787
vgb_2
Virginiamycin B lyase.
  
 
  0.685
nicF_1
Maleamate amidohydrolase.
  
  
  0.658
kipI
Kinase A inhibitor.
     
  0.627
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 0.593
gpsA_1
Glycerol-3-phosphate dehydrogenase [NAD(P+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.592
gpsA_2
Glycerol-3-phosphate dehydrogenase [NAD(P+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.592
nicF_2
Maleamate amidohydrolase.
  
  
 
0.583
phzD
Putative isochorismatase.
  
  
 0.544
dhbA
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.523
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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