Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydbC_2Putative oxidoreductase YdbC. (282 aa)    
Predicted Functional Partners:
pdxH_1
Pyridoxine/pyridoxamine 5'-phosphate oxidase.
     
  0.739
pdxH_2
Pyridoxine/pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
     
  0.739
yhdN_12
General stress protein 69.
  
     0.714
gpr_1
L-glyceraldehyde 3-phosphate reductase.
  
     0.704
T45_04463
Hypothetical protein.
 
     0.625
thiD
Hydroxymethylpyrimidine/phosphomethylpyrimidine.
    
 0.624
acuC
Acetoin utilization protein AcuC.
   
  0.596
morA
Morphine 6-dehydrogenase.
 
 0.543
glpF_1
Putative glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.477
glpF_2
Putative glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.477
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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