STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydbC_2Putative oxidoreductase YdbC. (282 aa)    
Predicted Functional Partners:
yhdN_12
General stress protein 69.
  
  
  0.767
gpr_1
L-glyceraldehyde 3-phosphate reductase.
  
     0.704
thiD
Hydroxymethylpyrimidine/phosphomethylpyrimidine.
    
 0.680
T45_04463
Hypothetical protein.
 
     0.640
eno_1
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
  
 
  0.571
eno_2
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
  
 
  0.571
morA
Morphine 6-dehydrogenase.
 
 0.568
glpF_1
Putative glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.516
glpF_2
Putative glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.516
T45_04862
Putative oxidoreductase/MSMEI_2347.
 
0.487
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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