STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araQ_13L-arabinose transport system permease protein. (293 aa)    
Predicted Functional Partners:
lacF_16
Lactose transport system permease protein LacF.
 
   0.962
araN_6
Putative arabinose-binding protein precursor.
 
  0.933
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.909
ugpA_1
SN-glycerol 3-phosphate transport system permease.
 
 0.867
lacF_3
Lactose transport system permease protein LacF.
 
   0.846
lacF_7
Lactose transport system permease protein LacF.
 
   0.846
lacF_10
Lactose transport system permease protein LacF.
 
   0.846
lacF_15
Lactose transport system permease protein LacF.
 
  0.846
lacF_18
Lactose transport system permease protein LacF.
 
   0.846
ugpA_3
SN-glycerol 3-phosphate transport system permease.
 
   0.846
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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