STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_04497alpha-L-arabinofuranosidase B (ABFB. (477 aa)    
Predicted Functional Partners:
T45_03311
Extracellular exo-alpha-L-arabinofuranosidase precursor.
 
  
 0.784
T45_08599
Hypothetical protein.
  
     0.750
abfB_5
Extracellular exo-alpha-L-arabinofuranosidase precursor; Belongs to the glycosyl hydrolase 43 family.
  
 
  0.741
abfB_3
Extracellular exo-alpha-L-arabinofuranosidase precursor; Belongs to the glycosyl hydrolase 43 family.
  
 
  0.740
T45_04246
Hypothetical protein.
 
     0.713
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
  
 
  0.712
T45_06518
Hypothetical protein.
  
 
  0.692
csxA_3
exo-beta-D-glucosaminidase precursor.
  
     0.691
T45_05143
Cycloisomaltooligosaccharide glucanotransferase.
  
     0.685
bga_2
Beta-galactosidase precursor; Belongs to the glycosyl hydrolase 35 family.
 
  0.667
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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