STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmt_2Putative dolichyl-phosphate-mannose--protein mannosyltransferase. (580 aa)    
Predicted Functional Partners:
sigE_9
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.794
T45_04499
Hypothetical protein.
       0.773
T45_01284
Hypothetical protein; Belongs to the UPF0232 family.
  
     0.742
T45_03993
YGGT family protein.
  
     0.737
ccsB
Cytochrome c biogenesis protein CcsB.
  
     0.686
T45_05450
Hypothetical protein.
  
     0.677
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.675
T45_00137
Hypothetical protein.
  
     0.659
T45_08812
Hypothetical protein.
  
     0.645
T45_00790
Phosphodiesterase YaeI.
  
     0.642
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.