STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_04499Hypothetical protein. (125 aa)    
Predicted Functional Partners:
pmt_2
Putative dolichyl-phosphate-mannose--protein mannosyltransferase.
       0.773
sigE_9
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.771
guaB_5
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.514
bprV
Extracellular basic protease precursor.
   
 
 0.509
T45_01421
Phage capsid family protein.
   
   0.485
T45_06932
Hypothetical protein.
   
   0.485
T45_02321
Hypothetical protein.
   
   0.484
T45_05366
Phage portal protein.
   
   0.483
T45_02630
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
   
   0.446
T45_04443
Hypothetical protein.
   
   0.446
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.