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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpA_5Putative D,D-dipeptide-binding periplasmic protein DdpA precursor. (516 aa)    
Predicted Functional Partners:
oppD_4
Oligopeptide transport ATP-binding protein OppD; Belongs to the binding-protein-dependent transport system permease family.
 0.986
gsiC_6
Glutathione transport system permease protein.
 
  0.976
gsiA_3
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 
 0.968
ddpC_3
Putative D,D-dipeptide transport system permease protein.
 
 0.951
ddpC_2
Putative D,D-dipeptide transport system permease protein.
 
 0.948
oppD_6
Oligopeptide transport ATP-binding protein OppD.
 
 0.938
ddpD
Putative D,D-dipeptide transport ATP-binding protein.
 
 0.933
ddpC_1
Putative D,D-dipeptide transport system permease protein.
 
 0.908
dppC
Dipeptide transport system permease protein.
 
 0.905
gsiD_1
Glutathione transport system permease protein.
 
 0.904
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.