STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uidA_1Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (707 aa)    
Predicted Functional Partners:
agaA_3
Alpha-galactosidase A precursor.
 
  
 0.854
mro_1
Aldose 1-epimerase precursor; Converts alpha-aldose to the beta-anomer.
 
 
 0.830
mro_2
Aldose 1-epimerase precursor; Converts alpha-aldose to the beta-anomer.
 
 
 0.830
chiA2_1
Chitinase precursor.
 
  
 0.812
xlnA_9
Endo-1,4-beta-xylanase A precursor; Belongs to the glycosyl hydrolase 30 family.
 
  
  0.796
T45_00927
Aldose 1-epimerase.
  
 
 0.772
lacZ_4
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
  
 
0.772
xylA_1
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.769
rafA_2
Alpha-galactosidase.
 
  
 0.769
agaA_4
Alpha-galactosidase A precursor.
 
  
  0.768
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.