STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolTMajor myo-inositol transporter IolT. (434 aa)    
Predicted Functional Partners:
T45_04550
Bacterial alpha-L-rhamnosidase.
 
 
   0.811
pcaK_2
4-hydroxybenzoate transporter PcaK.
  
     0.648
proP
Proline/betaine transporter.
  
  
  0.560
yhjE_2
Inner membrane metabolite transport protein.
  
     0.556
yhjE_1
Inner membrane metabolite transport protein.
  
     0.539
yveA_1
Aspartate-proton symporter.
  
 
   0.532
naiP
Putative niacin/nicotinamide transporter NaiP.
  
     0.531
yhjE_3
Inner membrane metabolite transport protein.
  
     0.506
xylE
D-xylose-proton symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
     0.501
yveA_2
Aspartate-proton symporter.
  
 
   0.471
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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