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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aprSubtilisin DY; Belongs to the peptidase S8 family. (903 aa)    
Predicted Functional Partners:
cpt
Carboxypeptidase T precursor.
  
 0.774
lieA_2
Leupeptin-inactivating enzyme 1 precursor.
 
  
 0.673
T45_06617
Hypothetical protein.
   
 0.665
T45_02014
Trypsin.
 
  
 0.641
sprT_1
Trypsin precursor.
 
  
 0.640
sprT_2
Trypsin precursor.
 
  
 0.638
T45_04677
Trypsin.
 
  
 0.613
T45_05415
Trypsin.
 
  
 0.604
pknB_6
Serine/threonine-protein kinase PknB.
  
 
   0.580
T45_03628
Hypothetical protein.
 
   0.527
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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