STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutR_8HTH-type transcriptional regulator LutR. (254 aa)    
Predicted Functional Partners:
dgoD_2
D-galactonate dehydratase.
     0.937
kdgA
KHG/KDPG aldolase.
       0.766
ydfH_5
Putative HTH-type transcriptional regulator.
  
    0.739
lutR_2
HTH-type transcriptional regulator LutR.
  
     0.725
mcbR_3
HTH-type transcriptional regulator McbR.
  
    0.718
ydfH_3
Putative HTH-type transcriptional regulator.
  
    0.706
ydfH_2
Putative HTH-type transcriptional regulator.
  
    0.693
ydfH_6
Putative HTH-type transcriptional regulator.
  
    0.683
araB_2
L-arabinolactonase.
 
     0.653
ydfH_7
Putative HTH-type transcriptional regulator.
  
    0.643
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.