STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoD_2D-galactonate dehydratase. (381 aa)    
Predicted Functional Partners:
kdgK_6
2-dehydro-3-deoxygluconokinase.
 
  
  0.973
lutR_8
HTH-type transcriptional regulator LutR.
     0.943
dgoD_1
D-galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 
0.909
kdgK_2
2-dehydro-3-deoxygluconokinase.
 
  
  0.869
kdgK_3
2-dehydro-3-deoxygluconokinase.
 
  
  0.859
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
  0.852
kdgA
KHG/KDPG aldolase.
 
   
 0.840
gudX
Glucarate dehydratase-related protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 
0.823
kduD_2
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
  
  
  0.821
gno_1
Gluconate 5-dehydrogenase.
  
  
  0.816
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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