STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgK_62-dehydro-3-deoxygluconokinase. (324 aa)    
Predicted Functional Partners:
kdgA
KHG/KDPG aldolase.
 
 
 0.994
dgoD_2
D-galactonate dehydratase.
 
  
  0.973
eda_2
Putative KHG/KDPG aldolase.
 
 
 0.949
eda_1
KHG/KDPG aldolase.
 
 
 0.945
fruA
PTS system fructose-specific EIIABC component.
  
 
 0.900
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.880
kdgK_4
2-dehydro-3-deoxygluconokinase.
  
  
 
0.840
ispD2
Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  0.816
araB_2
L-arabinolactonase.
     
 0.755
kduD_2
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
  
  0.731
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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