STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araB_2L-arabinolactonase. (295 aa)    
Predicted Functional Partners:
kdgA
KHG/KDPG aldolase.
     
 0.771
kdgK_6
2-dehydro-3-deoxygluconokinase.
     
 0.753
dgoD_2
D-galactonate dehydratase.
 
     0.744
vgb_2
Virginiamycin B lyase.
 
  
 0.733
lutR_8
HTH-type transcriptional regulator LutR.
 
     0.653
ghrB_3
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.485
gntK
Thermoresistant gluconokinase.
 
  
 0.459
dgoD_1
D-galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.455
cpnA_1
Cyclopentanol dehydrogenase.
       0.447
sodF1
Superoxide dismutase [Fe-Zn] 1; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
  0.426
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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