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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rafA_3Alpha-galactosidase. (715 aa)    
Predicted Functional Partners:
bgaA_2
Beta-galactosidase BgaA.
 
  
  0.853
bfrA
Beta-fructosidase.
 
  
 0.852
bgaA_1
Beta-galactosidase BgaA.
 
  
  0.849
T45_08941
Beta-galactosidase.
 
  
  0.837
T45_08363
Beta-galactosidase.
 
  
  0.836
T45_07086
Beta-galactosidase.
 
  
  0.833
bgaB
Beta-galactosidase bgaB.
 
  
  0.833
beta-galIII
Beta-galactosidase III.
 
  
  0.829
treS
Trehalose synthase/amylase TreS.
   
 
 0.808
T45_00927
Aldose 1-epimerase.
    
  0.802
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.