Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rafA_3Alpha-galactosidase. (715 aa)    
Predicted Functional Partners:
bgaA_2
Beta-galactosidase BgaA.
 
  
  0.829
bgaA_1
Beta-galactosidase BgaA.
 
  
  0.824
T45_08941
Beta-galactosidase.
 
  
  0.816
T45_08363
Beta-galactosidase.
 
  
  0.815
bfrA
Beta-fructosidase.
 
  
 0.813
T45_07086
Beta-galactosidase.
 
  
  0.811
bgaB
Beta-galactosidase bgaB.
 
  
  0.811
beta-galIII
Beta-galactosidase III.
 
  
  0.806
T45_00927
Aldose 1-epimerase.
    
 0.753
yicI_4
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
    
 0.752
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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