Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
T45_00944 | T45_00945 | T45_00944 | T45_00945 | Hypothetical protein. | Hypothetical protein. | 0.796 |
T45_00944 | barA_2 | T45_00944 | T45_05328 | Hypothetical protein. | Signal transduction histidine-protein kinase. | 0.442 |
T45_00944 | devR_4 | T45_00944 | T45_04594 | Hypothetical protein. | Transcriptional regulatory protein DevR (DosR). | 0.757 |
T45_00945 | T45_00944 | T45_00945 | T45_00944 | Hypothetical protein. | Hypothetical protein. | 0.796 |
T45_00945 | barA_2 | T45_00945 | T45_05328 | Hypothetical protein. | Signal transduction histidine-protein kinase. | 0.442 |
T45_00945 | devR_4 | T45_00945 | T45_04594 | Hypothetical protein. | Transcriptional regulatory protein DevR (DosR). | 0.757 |
T45_01411 | T45_09072 | T45_01411 | T45_09072 | Sensory histidine kinase AtoS. | Sensory histidine kinase AtoS. | 0.998 |
T45_01411 | barA_2 | T45_01411 | T45_05328 | Sensory histidine kinase AtoS. | Signal transduction histidine-protein kinase. | 0.999 |
T45_01411 | devR_4 | T45_01411 | T45_04594 | Sensory histidine kinase AtoS. | Transcriptional regulatory protein DevR (DosR). | 0.805 |
T45_01411 | gmr_2 | T45_01411 | T45_05878 | Sensory histidine kinase AtoS. | Cyclic di-GMP phosphodiesterase Gmr. | 0.986 |
T45_01411 | luxQ | T45_01411 | T45_00537 | Sensory histidine kinase AtoS. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
T45_01411 | ribBA_1 | T45_01411 | T45_08175 | Sensory histidine kinase AtoS. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.871 |
T45_01411 | yeaP | T45_01411 | T45_06103 | Sensory histidine kinase AtoS. | Putative diguanylate cyclase YeaP. | 0.928 |
T45_04593 | devR_4 | T45_04593 | T45_04594 | Hypothetical protein. | Transcriptional regulatory protein DevR (DosR). | 0.829 |
T45_09072 | T45_01411 | T45_09072 | T45_01411 | Sensory histidine kinase AtoS. | Sensory histidine kinase AtoS. | 0.998 |
T45_09072 | barA_2 | T45_09072 | T45_05328 | Sensory histidine kinase AtoS. | Signal transduction histidine-protein kinase. | 0.999 |
T45_09072 | devR_4 | T45_09072 | T45_04594 | Sensory histidine kinase AtoS. | Transcriptional regulatory protein DevR (DosR). | 0.945 |
T45_09072 | gmr_2 | T45_09072 | T45_05878 | Sensory histidine kinase AtoS. | Cyclic di-GMP phosphodiesterase Gmr. | 0.999 |
T45_09072 | luxQ | T45_09072 | T45_00537 | Sensory histidine kinase AtoS. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
T45_09072 | ribBA_1 | T45_09072 | T45_08175 | Sensory histidine kinase AtoS. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.919 |
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