Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
T45_04609Site-specific tyrosine recombinase XerC. (717 aa)    
Predicted Functional Partners:
T45_09311
Hypothetical protein.
  
    0.834
T45_03568
Prephenate dehydrogenase.
  
    0.769
whiA
Sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
  
    0.766
yedK
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
    0.764
fixL
Sensor protein FixL.
   
    0.763
apt_1
Adenine phosphoribosyltransferase.
   
    0.745
apt_2
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.745
T45_00793
Lac repressor; Belongs to the 'phage' integrase family.
  
     0.735
T45_06904
Hypothetical protein.
  
     0.667
T45_02317
P22 coat protein - gene protein 5.
  
     0.657
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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