Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppF_2Oligopeptide transport ATP-binding protein OppF. (274 aa)    
Predicted Functional Partners:
ddpC_3
Putative D,D-dipeptide transport system permease protein.
 
 0.992
ddpC_2
Putative D,D-dipeptide transport system permease protein.
 
 0.991
gsiC_7
Glutathione transport system permease protein.
 
 0.978
gsiD_3
Glutathione transport system permease protein.
 0.942
ddpD
Putative D,D-dipeptide transport ATP-binding protein.
 
0.932
gsiD_2
Glutathione transport system permease protein.
 0.927
dppC
Dipeptide transport system permease protein.
 0.918
gsiD_1
Glutathione transport system permease protein.
 0.912
ddpC_1
Putative D,D-dipeptide transport system permease protein.
 0.906
gsiC_3
Glutathione transport system permease protein.
 
 0.904
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.