STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguAAgmatine deiminase. (349 aa)    
Predicted Functional Partners:
T45_04754
N-carbamoyl-D-amino acid hydrolase.
 
 0.978
T45_04751
N-carbamoyl-D-amino acid hydrolase.
 
 0.960
adiA
Biodegradative arginine decarboxylase.
    
 0.900
gbh
Guanidinobutyrase; Belongs to the arginase family.
    
 0.886
ureA_2
Urease subunit alpha.
       0.830
ramA
(R)-stereoselective amidase.
 
 0.826
T45_03193
Nitrilase.
 
 
 0.749
T45_04645
Transcriptional regulator BetI.
 
     0.746
ureC_2
Urease subunit alpha.
       0.731
T45_01217
2-oxoglutaramate amidase.
 
 
 0.589
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.