Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_04697Hypothetical protein. (181 aa)    
Predicted Functional Partners:
otsA
Trehalose-phosphate synthase.
  
 
 0.847
ygjK
Glucosidase YgjK precursor.
   
 0.834
dhbF_8
Dimodular nonribosomal peptide synthase.
   
 0.755
fas6_1
LOG family protein ORF6 in fasciation locus.
   
 
  0.727
amy
Alpha-amylase precursor; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.669
T45_03149
Geranyl diphosphate 2-C-methyltransferase.
  
    0.657
T45_04696
Hypothetical protein.
       0.649
T45_03150
2-methylisoborneol synthase.
  
     0.623
alaA_2
Glutamate-pyruvate aminotransferase AlaA.
       0.623
T45_02582
Hypothetical protein.
 
 0.581
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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