STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_04697Hypothetical protein. (181 aa)    
Predicted Functional Partners:
otsA
Trehalose-phosphate synthase.
  
 
 0.880
ygjK
Glucosidase YgjK precursor.
  
 0.803
lieA_2
Leupeptin-inactivating enzyme 1 precursor.
    
  0.745
amy
Alpha-amylase precursor; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.737
T45_01116
Hypothetical protein.
    
 0.734
T45_00481
Hypothetical protein.
  
  
  0.707
T45_03149
Geranyl diphosphate 2-C-methyltransferase.
 
    0.658
T45_04696
Hypothetical protein.
       0.651
alaA_2
Glutamate-pyruvate aminotransferase AlaA.
       0.629
T45_03150
2-methylisoborneol synthase.
 
     0.623
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.