Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_04719Pectate lyase superfamily protein. (546 aa)    
Predicted Functional Partners:
T45_05868
Retaining alpha-galactosidase precursor.
 
 
  0.780
pelA_2
Pectate trisaccharide-lyase precursor.
    
 0.769
T45_02321
Hypothetical protein.
  
 
 0.767
T45_04720
poly(beta-D-mannuronate lyase.
       0.765
T45_02614
Hypothetical protein.
  
 
   0.752
T45_05366
Phage portal protein.
  
 
 0.751
T45_07785
Hypothetical protein.
  
     0.751
T45_01031
Hypothetical protein.
  
     0.733
T45_03704
Hypothetical protein.
  
     0.729
T45_06932
Hypothetical protein.
 
 
   0.720
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.