Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
T45_04720poly(beta-D-mannuronate lyase. (429 aa)    
Predicted Functional Partners:
T45_04719
Pectate lyase superfamily protein.
       0.765
T45_01165
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.660
T45_05303
Hypothetical protein.
  
     0.628
T45_02111
Hypothetical protein.
  
     0.570
bga_4
Beta-galactosidase precursor; Belongs to the glycosyl hydrolase 35 family.
  
     0.552
bga_1
Beta-galactosidase precursor; Belongs to the glycosyl hydrolase 35 family.
  
     0.504
T45_01869
Transglutaminase-activating metalloprotease.
  
     0.455
T45_08182
acyl-CoA thioesterase YbgC.
       0.446
yteR
Unsaturated rhamnogalacturonyl hydrolase YteR.
 
     0.428
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
     
  0.426
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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