STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_04741GDSL-like Lipase/Acylhydrolase. (611 aa)    
Predicted Functional Partners:
xynAS9_4
Endo-1,4-beta-xylanase A precursor.
 
 
 0.840
T45_06173
Endoglucanase E1 precursor.
   
 0.793
engD
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.793
xlnA_5
Endo-1,4-beta-xylanase A precursor.
  
 
  0.575
T45_04742
Hypothetical protein.
       0.541
celS_1
Endoglucanase S precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
 
   0.539
pelA_2
Pectate trisaccharide-lyase precursor.
    
 0.503
xynAS9_2
Endo-1,4-beta-xylanase A precursor.
  
 
  0.485
xlnA_7
Endo-1,4-beta-xylanase A precursor.
  
     0.474
xynZ_2
Endo-1,4-beta-xylanase Z precursor.
  
 
  0.456
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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