Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msmE_11Multiple sugar-binding protein precursor. (431 aa)    
Predicted Functional Partners:
lacF_19
Lactose transport system permease protein LacF.
 
  0.982
araQ_15
L-arabinose transport system permease protein.
 
  0.979
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.944
sugB_10
Trehalose transport system permease protein.
 
  0.907
lacF_25
Lactose transport system permease protein LacF.
 
  0.836
T45_07427
Hypothetical protein.
  
  
 
0.808
araQ_24
L-arabinose transport system permease protein.
 
  0.780
araQ_20
L-arabinose transport system permease protein.
 
  0.775
lacF_15
Lactose transport system permease protein LacF.
  
  0.560
malL_2
Oligo-1,6-glucosidase.
 
    0.530
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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