Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
carC_2All-trans-zeta-carotene desaturase. (472 aa)    
Predicted Functional Partners:
ymdB
O-acetyl-ADP-ribose deacetylase.
       0.805
crtB_1
All-trans-phytoene synthase.
  
 
 0.634
crtB_2
All-trans-phytoene synthase.
  
 
 0.634
crtB_3
All-trans-phytoene synthase.
  
 
 0.634
bchI
Magnesium-chelatase 38 kDa subunit.
  
 
 0.613
T45_04768
Hypothetical protein.
       0.569
pds
15-cis-phytoene desaturase.
    
 0.519
puo
Putrescine oxidase.
  
 
 0.456
T45_06491
Mitochondrial small ribosomal subunit Rsm22.
     
  0.401
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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