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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bmr3_7Multidrug resistance protein 3; Belongs to the major facilitator superfamily. (794 aa)    
Predicted Functional Partners:
chiA1
Chitinase A1 precursor.
    
  0.687
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
    0.610
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
    0.610
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 
 0.584
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
  0.521
rsbU_10
Phosphoserine phosphatase RsbU.
       0.516
T45_04800
Polyketide cyclase / dehydrase and lipid transport.
       0.500
txtB
Thaxtomin synthase B.
  
 
 0.451
txtA
Thaxtomin synthase A.
  
 
 0.451
cvaA
Colicin V secretion protein CvaA.
  
 
 0.433
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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