Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gvpK_1Gas vesicle protein K. (93 aa)    
Predicted Functional Partners:
gvpG_1
Gas vesicle protein G.
 
   
 0.973
gvpA_2
Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.973
T45_04819
Gas vesicle synthesis protein GvpL/GvpF.
 
   
 0.961
T45_04825
Gas vesicle protein.
 
   
 0.961
gvpA_1
Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.959
T45_04824
Gas vesicle synthesis protein GvpL/GvpF.
 
   
 0.956
T45_04821
Hypothetical protein.
 
     0.950
T45_04822
Polyketide cyclase / dehydrase and lipid transport.
 
     0.943
gvpO_1
Gas vesicle synthesis protein GvpO.
 
   
 0.924
T45_06951
Gas vesicle protein.
 
   
 0.836
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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