Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_04840Hypothetical protein. (209 aa)    
Predicted Functional Partners:
T45_04841
Metal-dependent hydrolase.
       0.873
T45_04843
Membrane protein of unknown function.
     0.860
T45_04842
Hypothetical protein.
       0.760
osmC
Peroxiredoxin OsmC.
       0.611
T45_04845
Hypothetical protein.
       0.475
T45_08135
Hypothetical protein.
  
     0.446
cvaA
Colicin V secretion protein CvaA.
  
    0.430
barA_2
Signal transduction histidine-protein kinase.
     
 0.430
T45_07862
Hypothetical protein.
 
     0.428
adiC
Arginine/agmatine antiporter.
       0.423
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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